Package org.sbml.jsbml

Examples of org.sbml.jsbml.SBMLException

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  /* (non-Javadoc)
   * @see org.sbml.jsbml.util.compilers.ASTNodeCompiler#unknownValue()
   */
  public ASTNodeValue unknownValue() throws SBMLException {
    throw new SBMLException(
        "cannot write unknown syntax tree nodes to a formula String");
  }
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              MathMLParser.getXMLnamespaceSBML());
        } else {
          // TODO: We could just remove all references to units
          // instead of throwing this exception. What is better? Loss
          // of information or exception?
          throw new SBMLException(
              "math element contains numbers that refer to unit definitions and therefore requires at least SBML Level 3");
        }
      }
      document.appendChild(math);
    } else {
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  /* (non-Javadoc)
   * @see org.sbml.jsbml.util.compilers.ASTNodeCompiler#unknownValue()
   */
  public ASTNodeValue unknownValue() throws SBMLException {
    throw new SBMLException(
        "cannot write unknown syntax tree nodes to a MathML document");
  }
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   */
  public ASTNodeValue compile(double mantissa, int exponent, String units) {

    if ((units != null) && (units.length() > 0)) {
      isUnitsDefined  = true;
      throw new SBMLException("Stopping the recursion, a units has been found and the SBML namespace is needed.");
    }
   
    return dummyValue;
  }
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   */
  public ASTNodeValue compile(double real, String units) {

    if ((units != null) && (units.length() > 0)) {
      isUnitsDefined  = true;
      throw new SBMLException("Stopping the recursion, a units has been found and the SBML namespace is needed.");
    }
   
    return dummyValue;
  }
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   */
  public ASTNodeValue compile(int integer, String units) {

    if ((units != null) && (units.length() > 0)) {
      isUnitsDefined  = true;
      throw new SBMLException("Stopping the recursion, a units has been found and the SBML namespace is needed.");
    }
   
    return dummyValue;
  }
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   */
  public ASTNodeValue compile(double mantissa, int exponent, String units) {

    if (units != null && units.length() > 0) {
      isUnitsDefined  = true;
      throw new SBMLException("Stopping the recursion, a units has been found and the SBML namespace is needed.");
    }
   
    return dummyValue;
  }
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   */
  public ASTNodeValue compile(double real, String units) {

    if (units != null && units.length() > 0) {
      isUnitsDefined  = true;
      throw new SBMLException("Stopping the recursion, a units has been found and the SBML namespace is needed.");
    }
   
    return dummyValue;
  }
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   */
  public ASTNodeValue compile(int integer, String units) {

    if (units != null && units.length() > 0) {
      isUnitsDefined  = true;
      throw new SBMLException("Stopping the recursion, a units has been found and the SBML namespace is needed.");
    }
   
    return dummyValue;
  }
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              MathMLParser.getXMLnamespaceSBML());
        } else {
          // TODO: We could just remove all references to units
          // instead of throwing this exception. What is better? Loss
          // of information or exception?
          throw new SBMLException(
              "math element contains numbers that refer to unit definitions and therefore requires at least SBML Level 3");
        }
      }
      document.appendChild(math);
    } else {
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Related Classes of org.sbml.jsbml.SBMLException

  • org.sbml.jsbml.ext.fbc.FluxBound
  • org.sbml.jsbml.ext.fbc.Objective
  • org.sbml.jsbml.ext.groups.Group
  • org.sbml.jsbml.ext.layout.CurveSegment
  • org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph
  • org.sbml.jsbml.ext.multi.Bond
  • org.sbml.jsbml.ext.qual.Input
  • org.sbml.jsbml.ext.qual.Output
  • org.sbml.jsbml.ext.spatial.AnalyticGeometry
  • org.sbml.jsbml.ext.spatial.AnalyticVolume
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