Package org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs

Examples of org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.MultiSampleEdge


        while (true) {
            visitedVertices.add(currentVertex);
            final Set<ReadSegmentCost> finishingAtElementCostSet = costsEndingByVertex.get(currentVertex);
            updateReadCosts(readCostByRead, visitedVertices, pathSoFar, finishingAtElementCostSet);
            if (!edgeIterator.hasNext()) break;
            final MultiSampleEdge nextEdge = edgeIterator.next();
            pathSoFar = new Route<>(pathSoFar, nextEdge);
            currentVertex = pathSoFar.getLastVertex();
        }

        int readIndex = 0;
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