Package org.broadinstitute.gatk.engine.walkers

Examples of org.broadinstitute.gatk.engine.walkers.Multiplexer


        }
        catch(NoSuchMethodException ex) {
            throw new ReviewedGATKException(String.format("Unable to find constructor for class %s with parameters %s",multiplexerType.getName(),Arrays.deepToString(sourceFields)),ex);
        }

        Multiplexer multiplexer;
        try {
            multiplexer = multiplexerConstructor.newInstance(sourceValues);
        }
        catch(IllegalAccessException ex) {
            throw new ReviewedGATKException(String.format("Constructor for class %s with parameters %s is inaccessible",multiplexerType.getName(),Arrays.deepToString(sourceFields)),ex);
        }
        catch(InstantiationException ex) {
            throw new ReviewedGATKException(String.format("Can't create class %s with parameters %s",multiplexerType.getName(),Arrays.deepToString(sourceFields)),ex);
        }
        catch(InvocationTargetException ex) {
            throw new ReviewedGATKException(String.format("Can't invoke constructor of class %s with parameters %s",multiplexerType.getName(),Arrays.deepToString(sourceFields)),ex);
        }

        return new MultiplexArgumentTypeDescriptor(multiplexer,multiplexer.multiplex());
    }
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