Package mesquite.lib

Examples of mesquite.lib.Double2DArray

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    List<MatrixColumnJDBC> columnJDBCs = new ArrayList<MatrixColumnJDBC>();
    List<ItemDefinitionJDBC> itemDefJDBCs = new ArrayList<ItemDefinitionJDBC>();
   
    // add Item definitions if there are any:
    for (int j = 0; j < numItems; j++) {
      Double2DArray anItem = continuousData.getItem(j);

      String itemName = continuousData.getItemName(j);
      mItemDefinitionNames[j] = itemName;
      mItemDefinitions[j] = anItem;
       
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        // pre calculate the compound values and cache it in compoundElement.
        StringBuilder compoundValues = new StringBuilder();
        compoundValues.append('(');

        for (int j = 0; j < numItems; j++) {
          Double2DArray anItem = continuousData.getItem(j);
          double elementValue = anItem.getValue(colIndex, pRowIndex);

          ContinuousMatrixElement anElement = new ContinuousMatrixElement();
          anElement.setValue(elementValue);
          anElement.setColumn(matrixColumn);
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        // pre calculate the compound values and cache it in compoundElement.
        StringBuilder compoundValues = new StringBuilder();
        compoundValues.append('(');

        for (int j = 0; j < numItems; j++) {
          Double2DArray anItem = getItemDefinitions()[j];
          double elementValue = anItem.getValue(pColIndex, rowIndex);

          compoundElement.getValues().add(elementValue);
         
          String itemName = getItemDefinitionNames()[j];
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Related Classes of mesquite.lib.Double2DArray

  • org.cipres.treebase.domain.nexus.mesquite.MesquiteContinuousMatrixConverter
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