Examples of edu.pitt.dbmi.nlp.noble.coder.NobleCoder

      //doc.getFilters().addAll(t.getFilters());
      terminology.addTerminology(t.getTerminology());
    }
    
    // do first level processing with NobleCoder
    NobleCoder coder = new NobleCoder(terminology);
    coder.process(doc);
    
    // now lets do information extraction
    for(Template template: doc.getTemplates()){
      if(template.isAppropriate(doc)){
        try {

    // reset stat counters
    int processCount = 0;
    long processTime = 0;
    
    // now create NobleCoder instance and run it
    NobleCoder coder = new NobleCoder(terminology);
    coder.setHandleAcronymExpansion(handleAcronyms);
    coder.setHandleNegation(handleNegation);
    //coder.setProcessFilter(NobleCoder.FILTER_DEID|NobleCoder.FILTER_HEADER);
    
    // initialize writers
    htmlExporter = new HTMLExporter(outputDir);
    csvExporter = new CSVExporter(outputDir);
    
    for(int i=0;i<files.size();i++){
      progress("processing report ("+(processCount+1)+") "+files.get(i).getName()+" ... \n");
      Document doc = coder.process(files.get(i));
      processTime += coder.getProcessTime();
      
      // now output HTML for this report
      htmlExporter.export(doc);
      csvExporter.export(doc);

Related Classes of edu.pitt.dbmi.nlp.noble.coder.NobleCoder

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