Package com.affymetrix.genoviz.glyph

Examples of com.affymetrix.genoviz.glyph.LabelledRectGlyph


            SymWithProps original_child = (SymWithProps) annot2protein.getChild(i);

            for (int j = 0; j < count2; j++) {
                SeqSymmetry grandchild = child.getChild(j);
                SeqSpan gSpan = grandchild.getSpan(vseq);
                LabelledRectGlyph cglyph = new LabelledRectGlyph();
        if(i%2 == 0) {
          cglyph.setColor(color);
        }
        else {
          cglyph.setColor(color.darker());
        }

        String spanno = "Span " + String.valueOf(i+1) + " of ";
        String interpro = (String) ((SymWithProps)annot2protein).getProperty("InterPro Name");
        if(interpro != null){
          spanno += interpro;
        }
        cglyph.setText(spanno);
                cglyph.setCoords(gSpan.getMin(), 0, gSpan.getLength(), 20);
                aGlyph.addChild(cglyph);
                seqmap.setDataModel(cglyph, original_child);
                original_child.setProperty("type", "protspan");
            }
        }
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Related Classes of com.affymetrix.genoviz.glyph.LabelledRectGlyph

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